Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RFX3P48380 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RFX3P48380 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 FGD5P1-202ENST00000614866 2498 ntBASIC14.13□□□□□ -0.15
RFX3P48380 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.13□□□□□ -0.15
RFX3P48380 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.13□□□□□ -0.15
RFX3P48380 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.13□□□□□ -0.15
RFX3P48380 AC124283.3-201ENST00000570869 594 ntBASIC14.13□□□□□ -0.15
RFX3P48380 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RFX3P48380 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.13□□□□□ -0.15
RFX3P48380 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RFX3P48380 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 CICP4-201ENST00000447359 2812 ntBASIC14.12□□□□□ -0.15
RFX3P48380 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
RFX3P48380 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
RFX3P48380 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.12□□□□□ -0.15
RFX3P48380 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 TP53TG3HP-202ENST00000569755 579 ntBASIC14.12□□□□□ -0.15
RFX3P48380 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.12□□□□□ -0.15
RFX3P48380 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.12□□□□□ -0.15
RFX3P48380 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RFX3P48380 AL137783.1-201ENST00000623494 1896 ntBASIC14.12□□□□□ -0.15
RFX3P48380 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
RFX3P48380 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 AL360270.3-201ENST00000609118 1348 ntBASIC14.12□□□□□ -0.15
RFX3P48380 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RFX3P48380 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.12□□□□□ -0.15
RFX3P48380 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms