Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
MSX2P35548 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
MSX2P35548 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
MSX2P35548 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX2P35548 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX2P35548 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 KRT18P3-201ENST00000451602 1288 ntBASIC14.33□□□□□ -0.12
MSX2P35548 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX2P35548 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
MSX2P35548 AC140113.2-201ENST00000604370 208 ntBASIC14.33□□□□□ -0.12
MSX2P35548 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX2P35548 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AC020658.7-201ENST00000624274 2442 ntBASIC14.33□□□□□ -0.12
MSX2P35548 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
MSX2P35548 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX2P35548 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
MSX2P35548 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
MSX2P35548 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
MSX2P35548 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
MSX2P35548 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.32□□□□□ -0.12
MSX2P35548 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.32□□□□□ -0.12
MSX2P35548 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
MSX2P35548 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 Z97205.2-201ENST00000564697 1639 ntBASIC14.32□□□□□ -0.12
MSX2P35548 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX2P35548 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX2P35548 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.31□□□□□ -0.12
MSX2P35548 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms