Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.79□□□□□ -0.2
ABCD3P28288 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
ABCD3P28288 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
ABCD3P28288 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.79□□□□□ -0.2
ABCD3P28288 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.79□□□□□ -0.2
ABCD3P28288 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.79□□□□□ -0.2
ABCD3P28288 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.79□□□□□ -0.2
ABCD3P28288 RN7SL713P-201ENST00000582127 302 ntBASIC13.79□□□□□ -0.2
ABCD3P28288 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.79□□□□□ -0.2
ABCD3P28288 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
ABCD3P28288 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ABCD3P28288 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 RN7SKP175-201ENST00000408472 289 ntBASIC13.78□□□□□ -0.2
ABCD3P28288 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.78□□□□□ -0.2
ABCD3P28288 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 YBX1P6-201ENST00000442962 1002 ntBASIC13.78□□□□□ -0.2
ABCD3P28288 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.78□□□□□ -0.2
ABCD3P28288 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.78□□□□□ -0.2
ABCD3P28288 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 C2orf69P2-201ENST00000562032 1123 ntBASIC13.78□□□□□ -0.2
ABCD3P28288 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.78□□□□□ -0.2
ABCD3P28288 AC073413.1-201ENST00000603927 732 ntBASIC13.78□□□□□ -0.2
ABCD3P28288 AL008721.1-201ENST00000609964 604 ntBASIC13.78□□□□□ -0.2
ABCD3P28288 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.78□□□□□ -0.2
ABCD3P28288 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
ABCD3P28288 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
ABCD3P28288 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCD3P28288 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.78□□□□□ -0.2
ABCD3P28288 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCD3P28288 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.77□□□□□ -0.2
ABCD3P28288 CICP24-201ENST00000605464 2705 ntBASIC13.77□□□□□ -0.2
ABCD3P28288 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
ABCD3P28288 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCD3P28288 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.77□□□□□ -0.2
ABCD3P28288 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCD3P28288 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCD3P28288 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCD3P28288 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
ABCD3P28288 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms