Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.76□□□□□ -0.05
CDH3P22223 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 AC136621.1-201ENST00000624017 2304 ntBASIC14.76□□□□□ -0.05
CDH3P22223 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 AL390755.1-201ENST00000623716 2027 ntBASIC14.75□□□□□ -0.05
CDH3P22223 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 CR383656.2-201ENST00000548656 2254 ntBASIC14.75□□□□□ -0.05
CDH3P22223 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.75□□□□□ -0.05
CDH3P22223 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 KLF2P2-201ENST00000416807 1039 ntBASIC14.75□□□□□ -0.05
CDH3P22223 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH3P22223 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH3P22223 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 LRRC59-203ENST00000576448 1531 ntBASIC14.75□□□□□ -0.05
CDH3P22223 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH3P22223 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH3P22223 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CDH3P22223 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.74□□□□□ -0.05
CDH3P22223 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 AL158070.2-201ENST00000623713 1621 ntBASIC14.74□□□□□ -0.05
CDH3P22223 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 AC020658.6-201ENST00000623564 1870 ntBASIC14.74□□□□□ -0.05
CDH3P22223 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CDH3P22223 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.74□□□□□ -0.05
CDH3P22223 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CDH3P22223 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.74□□□□□ -0.05
CDH3P22223 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.74□□□□□ -0.05
CDH3P22223 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.74□□□□□ -0.05
CDH3P22223 AL645937.2-201ENST00000396808 931 ntBASIC14.74□□□□□ -0.05
CDH3P22223 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.74□□□□□ -0.05
CDH3P22223 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.74□□□□□ -0.05
CDH3P22223 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.74□□□□□ -0.05
CDH3P22223 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH3P22223 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms