Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.32■□□□□ 0.04
HMGA1P17096 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 MIR4754-201ENST00000582477 89 ntBASIC15.32■□□□□ 0.04
HMGA1P17096 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGA1P17096 MEG3_2.1-201ENST00000611456 105 ntBASIC15.32■□□□□ 0.04
HMGA1P17096 AC092299.1-201ENST00000632679 757 ntBASIC15.32■□□□□ 0.04
HMGA1P17096 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGA1P17096 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGA1P17096 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGA1P17096 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 ELK2AP-201ENST00000392510 1007 ntBASIC15.31■□□□□ 0.04
HMGA1P17096 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGA1P17096 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGA1P17096 RTN3P1-201ENST00000536295 711 ntBASIC15.31■□□□□ 0.04
HMGA1P17096 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGA1P17096 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGA1P17096 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HMGA1P17096 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGA1P17096 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms