Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.35□□□□□ -0.11
PDLIM1O00151 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM1O00151 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.35□□□□□ -0.11
PDLIM1O00151 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM1O00151 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC130686.1-201ENST00000622936 2466 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 AZGP1P1-201ENST00000411909 902 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 CNN2P2-201ENST00000443536 909 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 CNN2P3-201ENST00000450201 906 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.34□□□□□ -0.11
PDLIM1O00151 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC051619.7-201ENST00000568314 623 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 AL136317.3-201ENST00000618497 906 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 AC023090.2-201ENST00000625182 2110 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM1O00151 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC004241.5-201ENST00000623870 2448 ntBASIC14.34□□□□□ -0.11
PDLIM1O00151 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PDLIM1O00151 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM1O00151 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM1O00151 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM1O00151 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM1O00151 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.33□□□□□ -0.11
PDLIM1O00151 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
PDLIM1O00151 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.33□□□□□ -0.11
PDLIM1O00151 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM1O00151 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
PDLIM1O00151 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM1O00151 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM1O00151 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM1O00151 AC020658.7-201ENST00000624274 2442 ntBASIC14.33□□□□□ -0.12
PDLIM1O00151 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM1O00151 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM1O00151 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM1O00151 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM1O00151 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM1O00151 AL139010.1-201ENST00000454878 894 ntBASIC14.33□□□□□ -0.12
PDLIM1O00151 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.33□□□□□ -0.12
PDLIM1O00151 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
PDLIM1O00151 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM1O00151 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
PDLIM1O00151 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM1O00151 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM1O00151 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms