Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC111170.3-201ENST00000624282 2464 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 HADH-202ENST00000403312 1752 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AP000842.3-202ENST00000569238 1080 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AKAP8P1-201ENST00000434743 1349 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC018665.1-201ENST00000622927 1362 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AL118506.1-201ENST00000601296 3082 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AGGF1P1-201ENST00000509500 2073 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AL139385.1-201ENST00000611744 3272 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AC023794.5-201ENST00000564380 2157 ntBASIC10.99□□□□□ -0.65
SMKR1H3BMG3 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AL031284.1-201ENST00000419297 478 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AL671277.1-201ENST00000429656 993 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 HIST3H2BA-201ENST00000436555 524 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 KRT18P2-201ENST00000447938 1258 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC064836.3-201ENST00000607928 673 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms