Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 NUDT4P2-201ENST00000578341 546 ntBASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC008825.2-201ENST00000603374 718 ntBASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC092299.1-201ENST00000632679 757 ntBASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 PCDHGB8P-201ENST00000502926 1973 ntBASIC28.01■■■□□ 2.08
SHROOM4Q9ULL8 KRT8P31-201ENST00000504812 1408 ntBASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 NCR3-202ENST00000376071 541 ntTSL 5 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 AP000358.1-201ENST00000456260 156 ntBASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 AC008805.1-201ENST00000590892 364 ntBASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 AP003392.6-201ENST00000607709 325 ntBASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM4Q9ULL8 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 EIF5AP2-201ENST00000585668 1047 ntBASIC28■■■□□ 2.07
SHROOM4Q9ULL8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM4Q9ULL8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 SALL4P5-201ENST00000419001 1760 ntBASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 MIR5196-201ENST00000578146 115 ntBASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AC148477.9-201ENST00000623974 539 ntBASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AC136759.1-202ENST00000530858 2194 ntBASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM4Q9ULL8 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CICP23-201ENST00000605013 2741 ntBASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms