Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 AC006504.5-208ENST00000588784 2401 ntBASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.82■□□□□ 0.12
PAAF1Q9BRP4 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AL596276.2-201ENST00000447525 331 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC006122.1-201ENST00000493323 440 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC126177.1-201ENST00000547829 2218 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC103988.2-201ENST00000561804 725 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MRPL37P1-201ENST00000592451 1337 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AL136172.1-201ENST00000598590 1394 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 AC018529.2-202ENST00000611482 3087 ntBASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.81■□□□□ 0.12
PAAF1Q9BRP4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AC023157.3-201ENST00000619086 2088 ntBASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ISCA2P1-201ENST00000425548 448 ntBASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms