Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 RGS5-216ENST00000449680 788 ntTSL 3 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 AC093826.1-201ENST00000508655 993 ntBASIC19.87■□□□□ 0.77
NPHP3Q7Z494 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 AC006548.2-201ENST00000605217 529 ntBASIC19.87■□□□□ 0.77
NPHP3Q7Z494 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 PYY2-201ENST00000315776 282 ntBASIC19.86■□□□□ 0.77
NPHP3Q7Z494 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 MIR6746-201ENST00000620971 63 ntBASIC19.86■□□□□ 0.77
NPHP3Q7Z494 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP3Q7Z494 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 NME4-203ENST00000397722 1232 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 AC098934.1-203ENST00000442868 1262 ntBASIC19.85■□□□□ 0.77
NPHP3Q7Z494 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 AP005264.6-204ENST00000588436 719 ntBASIC19.85■□□□□ 0.77
NPHP3Q7Z494 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.85■□□□□ 0.77
NPHP3Q7Z494 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP3Q7Z494 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 AL136172.1-201ENST00000598590 1394 ntBASIC19.84■□□□□ 0.77
NPHP3Q7Z494 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 ZNF436-AS1-201ENST00000335648 2547 ntBASIC19.84■□□□□ 0.77
NPHP3Q7Z494 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms