Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AL118508.1-201ENST00000613502 2345 ntBASIC18.44■□□□□ 0.54
RC3H1Q5TC82 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AC006372.4-201ENST00000624122 1543 ntBASIC18.44■□□□□ 0.54
RC3H1Q5TC82 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 OR5BD1P-201ENST00000532527 817 ntBASIC18.43■□□□□ 0.54
RC3H1Q5TC82 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 RN7SL357P-201ENST00000581065 298 ntBASIC18.43■□□□□ 0.54
RC3H1Q5TC82 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 AC090386.2-201ENST00000623010 1039 ntBASIC18.43■□□□□ 0.54
RC3H1Q5TC82 AC002044.2-201ENST00000624910 970 ntBASIC18.43■□□□□ 0.54
RC3H1Q5TC82 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC18.43■□□□□ 0.54
RC3H1Q5TC82 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 RN7SKP109-201ENST00000410592 316 ntBASIC18.42■□□□□ 0.54
RC3H1Q5TC82 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 AL135901.1-201ENST00000451812 333 ntBASIC18.42■□□□□ 0.54
RC3H1Q5TC82 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 ELP5-212ENST00000574255 671 ntTSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 SIGLEC22P-201ENST00000599104 714 ntBASIC18.42■□□□□ 0.54
RC3H1Q5TC82 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 TEKT4P2-202ENST00000559466 1312 ntBASIC18.42■□□□□ 0.54
RC3H1Q5TC82 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RC3H1Q5TC82 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RC3H1Q5TC82 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms