Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
HDAC4P56524 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.66■□□□□ 0.1
HDAC4P56524 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 AC245100.3-201ENST00000441281 285 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.66■□□□□ 0.1
HDAC4P56524 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.66■□□□□ 0.1
HDAC4P56524 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.66■□□□□ 0.1
HDAC4P56524 AC025279.2-201ENST00000569730 653 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 RN7SL48P-201ENST00000579283 293 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 BTNL10-201ENST00000595971 695 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HDAC4P56524 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
HDAC4P56524 CLUHP2-201ENST00000426660 1303 ntBASIC15.66■□□□□ 0.1
HDAC4P56524 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.66■□□□□ 0.1
HDAC4P56524 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
HDAC4P56524 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 AC003102.2-201ENST00000589195 1469 ntBASIC15.65■□□□□ 0.1
HDAC4P56524 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.65■□□□□ 0.1
HDAC4P56524 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.65■□□□□ 0.1
HDAC4P56524 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 CR383656.12-201ENST00000549567 513 ntBASIC15.65■□□□□ 0.1
HDAC4P56524 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.65■□□□□ 0.1
HDAC4P56524 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.65■□□□□ 0.1
HDAC4P56524 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.65■□□□□ 0.1
HDAC4P56524 ENPP7P14-201ENST00000621765 1040 ntBASIC15.65■□□□□ 0.1
HDAC4P56524 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
HDAC4P56524 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
HDAC4P56524 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC4P56524 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC4P56524 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC4P56524 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HDAC4P56524 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms