Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.21□□□□□ -0.14
LIM2P55344 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 GRK6P1-201ENST00000400595 1711 ntBASIC14.21□□□□□ -0.14
LIM2P55344 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.21□□□□□ -0.14
LIM2P55344 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.21□□□□□ -0.14
LIM2P55344 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.21□□□□□ -0.14
LIM2P55344 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 BOLA2P3-201ENST00000404566 256 ntBASIC14.2□□□□□ -0.14
LIM2P55344 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 CNN2P8-201ENST00000421872 913 ntBASIC14.2□□□□□ -0.14
LIM2P55344 AC234783.1-201ENST00000441761 496 ntBASIC14.2□□□□□ -0.14
LIM2P55344 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.2□□□□□ -0.14
LIM2P55344 AL590640.2-201ENST00000457038 527 ntBASIC14.2□□□□□ -0.14
LIM2P55344 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 MESTP3-201ENST00000503460 968 ntBASIC14.2□□□□□ -0.14
LIM2P55344 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.2□□□□□ -0.14
LIM2P55344 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.2□□□□□ -0.14
LIM2P55344 RAB43P1-201ENST00000561790 589 ntBASIC14.2□□□□□ -0.14
LIM2P55344 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.2□□□□□ -0.14
LIM2P55344 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
LIM2P55344 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.2□□□□□ -0.14
LIM2P55344 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LIM2P55344 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.14
LIM2P55344 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.19□□□□□ -0.14
LIM2P55344 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
LIM2P55344 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 AC079776.1-201ENST00000401540 1152 ntBASIC14.19□□□□□ -0.14
LIM2P55344 ARSEP1-201ENST00000420443 635 ntBASIC14.19□□□□□ -0.14
LIM2P55344 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 AC007969.1-201ENST00000433675 447 ntBASIC14.19□□□□□ -0.14
LIM2P55344 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.19□□□□□ -0.14
LIM2P55344 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.19□□□□□ -0.14
LIM2P55344 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 AC078819.1-201ENST00000547454 765 ntBASIC14.19□□□□□ -0.14
LIM2P55344 AC012085.1-201ENST00000548270 765 ntBASIC14.19□□□□□ -0.14
LIM2P55344 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 AL512343.1-201ENST00000605837 169 ntBASIC14.19□□□□□ -0.14
LIM2P55344 AC138466.3-201ENST00000619983 221 ntBASIC14.19□□□□□ -0.14
LIM2P55344 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms