Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.22□□□□□ -0.29
CX3CR1P49238 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CX3CR1P49238 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.22□□□□□ -0.29
CX3CR1P49238 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
CX3CR1P49238 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CX3CR1P49238 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CX3CR1P49238 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 SLC7A15P-201ENST00000424028 1363 ntBASIC13.21□□□□□ -0.29
CX3CR1P49238 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 BX640514.1-201ENST00000583223 1918 ntBASIC13.21□□□□□ -0.29
CX3CR1P49238 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC023090.2-201ENST00000625182 2110 ntBASIC13.21□□□□□ -0.29
CX3CR1P49238 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
CX3CR1P49238 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AP001582.1-201ENST00000525856 295 ntBASIC13.21□□□□□ -0.29
CX3CR1P49238 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CR1P49238 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CX3CR1P49238 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CR1P49238 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CR1P49238 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CR1P49238 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CR1P49238 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.3
CX3CR1P49238 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CR1P49238 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CR1P49238 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
CX3CR1P49238 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.21□□□□□ -0.3
CX3CR1P49238 AC006504.5-208ENST00000588784 2401 ntBASIC13.21□□□□□ -0.3
CX3CR1P49238 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CR1P49238 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.21□□□□□ -0.3
CX3CR1P49238 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms