Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 AL390755.1-201ENST00000623716 2027 ntBASIC14.15□□□□□ -0.14
RFX3P48380 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 AC092053.3-201ENST00000641308 4975 ntBASIC14.15□□□□□ -0.14
RFX3P48380 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 AC013726.1-201ENST00000563747 2285 ntBASIC14.15□□□□□ -0.14
RFX3P48380 AC232323.1-201ENST00000540724 2099 ntBASIC14.15□□□□□ -0.14
RFX3P48380 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
RFX3P48380 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 GAPDHP40-201ENST00000505218 1006 ntBASIC14.15□□□□□ -0.14
RFX3P48380 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 BX539320.1-201ENST00000623759 877 ntBASIC14.15□□□□□ -0.14
RFX3P48380 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.15□□□□□ -0.14
RFX3P48380 AC087386.2-201ENST00000623212 4637 ntBASIC14.15□□□□□ -0.14
RFX3P48380 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RFX3P48380 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFX3P48380 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
RFX3P48380 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 DGCR5-201ENST00000399539 862 ntBASIC14.14□□□□□ -0.15
RFX3P48380 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.14□□□□□ -0.15
RFX3P48380 CRB3P1-201ENST00000449338 276 ntBASIC14.14□□□□□ -0.15
RFX3P48380 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.14□□□□□ -0.15
RFX3P48380 TMEM261P1-201ENST00000604899 340 ntBASIC14.14□□□□□ -0.15
RFX3P48380 WFDC1-204ENST00000613603 549 ntBASIC14.14□□□□□ -0.15
RFX3P48380 CU634019.7-201ENST00000624153 1185 ntBASIC14.14□□□□□ -0.15
RFX3P48380 FP236241.2-201ENST00000624906 1185 ntBASIC14.14□□□□□ -0.15
RFX3P48380 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RFX3P48380 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 KRT8P22-201ENST00000562317 1415 ntBASIC14.14□□□□□ -0.15
RFX3P48380 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RFX3P48380 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RFX3P48380 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms