Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A5P29400 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A5P29400 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A5P29400 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A5P29400 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
COL4A5P29400 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL4A5P29400 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC17.39■□□□□ 0.38
COL4A5P29400 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL4A5P29400 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A5P29400 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 MIR5001-201ENST00000580185 100 ntBASIC17.39■□□□□ 0.37
COL4A5P29400 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A5P29400 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL4A5P29400 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A5P29400 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A5P29400 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC17.39■□□□□ 0.37
COL4A5P29400 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A5P29400 AL132994.1-201ENST00000554098 400 ntBASIC17.39■□□□□ 0.37
COL4A5P29400 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A5P29400 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A5P29400 FUCA1P1-201ENST00000374476 1351 ntBASIC17.38■□□□□ 0.37
COL4A5P29400 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
COL4A5P29400 TMBIM7P-203ENST00000641617 1718 ntBASIC17.38■□□□□ 0.37
COL4A5P29400 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A5P29400 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC17.38■□□□□ 0.37
COL4A5P29400 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A5P29400 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 KRT18P37-201ENST00000520711 1282 ntBASIC17.38■□□□□ 0.37
COL4A5P29400 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.38■□□□□ 0.37
COL4A5P29400 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.38■□□□□ 0.37
COL4A5P29400 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.38■□□□□ 0.37
COL4A5P29400 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A5P29400 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
COL4A5P29400 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A5P29400 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
COL4A5P29400 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A5P29400 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A5P29400 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 AC006529.1-201ENST00000459978 637 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 AC063952.3-201ENST00000467756 308 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 AC092862.1-201ENST00000541534 533 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A5P29400 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms