Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 REEP4-207ENST00000523293 913 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 COX11-202ENST00000571584 1108 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC008738.7-201ENST00000609744 511 ntBASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC004790.1-201ENST00000612686 536 ntBASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 BANP-203ENST00000393207 2438 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AL928921.2-201ENST00000641325 2442 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 EDF1-203ENST00000371649 790 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 HLA-K-203ENST00000430151 1046 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ZNF890P-202ENST00000530367 1156 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC135586.1-201ENST00000539323 574 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 PRR29-204ENST00000577953 565 ntTSL 4 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC027307.3-201ENST00000594262 1100 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 SRD5A3P1-201ENST00000603021 949 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 AC023090.2-201ENST00000625182 2110 ntBASIC11.47□□□□□ -0.57
HLA-DMBP28068 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DMBP28068 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DMBP28068 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms