Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB1P09429 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 CD8B2-202ENST00000417670 633 ntBASIC17.63■□□□□ 0.41
HMGB1P09429 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB1P09429 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB1P09429 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB1P09429 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB1P09429 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.63■□□□□ 0.41
HMGB1P09429 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB1P09429 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB1P09429 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB1P09429 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
HMGB1P09429 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB1P09429 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HMGB1P09429 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HMGB1P09429 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.62■□□□□ 0.41
HMGB1P09429 AC132938.2-201ENST00000579188 680 ntBASIC17.62■□□□□ 0.41
HMGB1P09429 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HMGB1P09429 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB1P09429 AL591163.1-201ENST00000641757 987 ntBASIC17.62■□□□□ 0.41
HMGB1P09429 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB1P09429 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HMGB1P09429 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB1P09429 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB1P09429 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGB1P09429 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms