Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP4O75161 ODCP-201ENST00000459650 1639 ntBASIC20.39■□□□□ 0.86
NPHP4O75161 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP4O75161 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.39■□□□□ 0.86
NPHP4O75161 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 OR7E115P-201ENST00000382617 1024 ntBASIC20.39■□□□□ 0.85
NPHP4O75161 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 NRADDP-201ENST00000437305 691 ntBASIC20.39■□□□□ 0.85
NPHP4O75161 GOLGA6L16P-201ENST00000441780 1299 ntBASIC20.39■□□□□ 0.85
NPHP4O75161 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 AC087203.1-201ENST00000532111 1181 ntBASIC20.39■□□□□ 0.85
NPHP4O75161 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 AL132994.1-201ENST00000554098 400 ntBASIC20.39■□□□□ 0.85
NPHP4O75161 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 DLK1-205ENST00000556051 469 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC20.39■□□□□ 0.85
NPHP4O75161 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC20.39■□□□□ 0.85
NPHP4O75161 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC20.39■□□□□ 0.85
NPHP4O75161 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
NPHP4O75161 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP4O75161 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.39■□□□□ 0.85
NPHP4O75161 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NPHP4O75161 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.39■□□□□ 0.85
NPHP4O75161 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 AL157823.1-201ENST00000403727 628 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 AL080243.1-201ENST00000423293 1060 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 HNRNPA1P2-207ENST00000432375 960 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 CDCA4P4-201ENST00000435216 680 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 RN7SL788P-201ENST00000460504 316 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 AC025186.1-201ENST00000478174 870 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 HNRNPA1P5-201ENST00000558213 966 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 AC145285.5-201ENST00000562217 361 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC20.38■□□□□ 0.85
NPHP4O75161 AL021707.6-201ENST00000609212 491 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 AL359091.4-201ENST00000610052 409 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 KHSRPP1-201ENST00000427983 1768 ntBASIC20.38■□□□□ 0.85
NPHP4O75161 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP4O75161 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP4O75161 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP4O75161 AC008536.3-201ENST00000623282 1599 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP4O75161 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP4O75161 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP4O75161 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP4O75161 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NPHP4O75161 LINC00265-2P-201ENST00000413372 782 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP4O75161 IFNWP2-201ENST00000431203 580 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC20.37■□□□□ 0.85
NPHP4O75161 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP4O75161 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP4O75161 TYMSP2-201ENST00000589501 424 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP4O75161 GGNBP1-204ENST00000613113 887 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC20.37■□□□□ 0.85
NPHP4O75161 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP4O75161 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms