Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC130709.1-201ENST00000484779 1212 ntBASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC074138.1-201ENST00000611182 1303 ntBASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC011840.2-201ENST00000563063 1520 ntBASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 AC009093.2-202ENST00000620513 2079 ntBASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ALG3P1-201ENST00000508806 1114 ntBASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SCARNA21-201ENST00000517026 139 ntBASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 KRT8P21-201ENST00000430398 1491 ntBASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 MBLAC2-202ENST00000514906 1936 ntBASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDHGA1Q9Y5H4 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 AC112504.1-201ENST00000623415 1841 ntBASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDHGA1Q9Y5H4 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms