Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AC006328.1-201ENST00000437571 379 ntBASIC14.38□□□□□ -0.11
VPS13AQ96RL7 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PRMT1P1-201ENST00000604252 1009 ntBASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AC012508.2-201ENST00000567613 1472 ntBASIC14.38□□□□□ -0.11
VPS13AQ96RL7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AL121949.3-201ENST00000406684 385 ntBASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AC104961.1-201ENST00000427605 771 ntBASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC019109.1-201ENST00000401725 1874 ntBASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 CASP2-203ENST00000392925 616 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC254633.1-201ENST00000606790 345 ntBASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC006986.1-201ENST00000612764 241 ntBASIC14.37□□□□□ -0.11
VPS13AQ96RL7 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 SSR4P1-203ENST00000599569 2260 ntBASIC14.37□□□□□ -0.11
VPS13AQ96RL7 SALL4P5-201ENST00000419001 1760 ntBASIC14.37□□□□□ -0.11
VPS13AQ96RL7 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS13AQ96RL7 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 OR8T1P-201ENST00000421347 918 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 RNA5SP406-201ENST00000516106 112 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms