Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC006453.4-201ENST00000636949 1252 ntBASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PTCHD1Q96NR3 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 CD8B2-202ENST00000417670 633 ntBASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 POM121L8P-201ENST00000417732 1281 ntBASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 POM121L9P-203ENST00000441984 1285 ntBASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AC023310.1-201ENST00000554836 735 ntBASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 ACE3P-201ENST00000423435 1973 ntBASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTCHD1Q96NR3 AHCYP2-201ENST00000430630 1300 ntBASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AJ011931.1-201ENST00000618749 2492 ntBASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AC099336.1-201ENST00000417053 1171 ntBASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 FAM8A4P-201ENST00000435433 1213 ntBASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTCHD1Q96NR3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms