Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 AL354702.1-201ENST00000442006 1960 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 AL009178.2-201ENST00000597278 2719 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 AC015656.1-201ENST00000624209 3578 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 C2orf27AP3-201ENST00000434123 579 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 FTH1P14-201ENST00000482930 551 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 MESTP3-201ENST00000503460 968 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 AL354718.3-201ENST00000616414 581 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 CR382287.1-201ENST00000623954 586 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC11.59□□□□□ -0.55
CCDC140Q96MF4 AC040160.2-201ENST00000623816 1675 ntBASIC11.59□□□□□ -0.55
CCDC140Q96MF4 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.55
CCDC140Q96MF4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
CCDC140Q96MF4 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 TPM3P8-201ENST00000330554 643 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AL391280.1-201ENST00000506969 1062 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC131206.1-201ENST00000538078 1211 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 KRT90P-201ENST00000549264 1064 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms