Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLHC1Q8NHS4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.46□□□□□ -0.09
CLHC1Q8NHS4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLHC1Q8NHS4 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
CLHC1Q8NHS4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.46□□□□□ -0.1
CLHC1Q8NHS4 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.1
CLHC1Q8NHS4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLHC1Q8NHS4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 AC005498.2-205ENST00000593218 784 ntBASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CLHC1Q8NHS4 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AC138969.2-201ENST00000532739 9932 ntBASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AC041040.2-201ENST00000622926 2899 ntBASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms