Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.55□□□□□ -0.08
LYSMD4Q5XG99 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.55□□□□□ -0.08
LYSMD4Q5XG99 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 RNA5SP359-201ENST00000364838 113 ntBASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 RPL18AP3-201ENST00000462885 528 ntBASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 AP003398.1-201ENST00000531124 318 ntBASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LYSMD4Q5XG99 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 AHCYP4-201ENST00000419201 1315 ntBASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 PIN4P1-201ENST00000451079 396 ntBASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 MIR6858-201ENST00000620733 67 ntBASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LYSMD4Q5XG99 AC007292.2-201ENST00000593524 1812 ntBASIC14.52□□□□□ -0.08
LYSMD4Q5XG99 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LYSMD4Q5XG99 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.52□□□□□ -0.08
LYSMD4Q5XG99 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms