Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 MTX1P1-201ENST00000440904 838 ntBASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 RPSAP36-202ENST00000494591 1261 ntBASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 AC006504.5-208ENST00000588784 2401 ntBASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC144BQ3MJ40 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC144BQ3MJ40 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
CCDC144BQ3MJ40 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 CALR4P-201ENST00000431943 946 ntBASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AC104982.3-201ENST00000581995 514 ntBASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 EEF1DP1-201ENST00000585891 896 ntBASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AC097359.2-201ENST00000604992 2389 ntBASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC144BQ3MJ40 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms