Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.16□□□□□ -0.3
TFF3Q07654 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.16□□□□□ -0.3
TFF3Q07654 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC13.16□□□□□ -0.3
TFF3Q07654 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.16□□□□□ -0.3
TFF3Q07654 AP000346.4-201ENST00000614827 381 ntBASIC13.16□□□□□ -0.3
TFF3Q07654 AL136301.1-201ENST00000615830 422 ntBASIC13.16□□□□□ -0.3
TFF3Q07654 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.16□□□□□ -0.3
TFF3Q07654 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.16□□□□□ -0.3
TFF3Q07654 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
TFF3Q07654 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.16□□□□□ -0.3
TFF3Q07654 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.16□□□□□ -0.3
TFF3Q07654 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.16□□□□□ -0.3
TFF3Q07654 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
TFF3Q07654 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
TFF3Q07654 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.15□□□□□ -0.3
TFF3Q07654 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
TFF3Q07654 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
TFF3Q07654 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 AC234782.1-201ENST00000451950 919 ntBASIC13.15□□□□□ -0.3
TFF3Q07654 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.15□□□□□ -0.3
TFF3Q07654 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.15□□□□□ -0.3
TFF3Q07654 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.15□□□□□ -0.3
TFF3Q07654 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 AC090164.2-201ENST00000611487 516 ntBASIC13.15□□□□□ -0.3
TFF3Q07654 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 AL353770.1-201ENST00000614915 403 ntBASIC13.15□□□□□ -0.3
TFF3Q07654 MIR7845-201ENST00000618396 99 ntBASIC13.15□□□□□ -0.3
TFF3Q07654 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.15□□□□□ -0.3
TFF3Q07654 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.15□□□□□ -0.3
TFF3Q07654 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.15□□□□□ -0.3
TFF3Q07654 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TFF3Q07654 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
TFF3Q07654 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
TFF3Q07654 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
TFF3Q07654 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.15□□□□□ -0.31
TFF3Q07654 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.14□□□□□ -0.31
TFF3Q07654 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
TFF3Q07654 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
TFF3Q07654 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.14□□□□□ -0.31
TFF3Q07654 AL360270.3-201ENST00000609118 1348 ntBASIC13.14□□□□□ -0.31
TFF3Q07654 AC006480.2-201ENST00000609770 1337 ntBASIC13.14□□□□□ -0.31
TFF3Q07654 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
TFF3Q07654 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
TFF3Q07654 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.14□□□□□ -0.31
TFF3Q07654 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms