Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
H3F3AP84243 AP000593.2-201ENST00000542775 1433 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.41□□□□□ -0.26
H3F3AP84243 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 PDIA3P1-201ENST00000471856 1510 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 RN7SKP230-201ENST00000365642 335 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 FAM197Y7-201ENST00000432892 766 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 AC007969.1-201ENST00000433675 447 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.41□□□□□ -0.26
H3F3AP84243 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.41□□□□□ -0.26
H3F3AP84243 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.41□□□□□ -0.26
H3F3AP84243 RAB43P1-201ENST00000561790 589 ntBASIC13.41□□□□□ -0.26
H3F3AP84243 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.41□□□□□ -0.26
H3F3AP84243 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
H3F3AP84243 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.41□□□□□ -0.26
H3F3AP84243 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.4□□□□□ -0.26
H3F3AP84243 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.4□□□□□ -0.26
H3F3AP84243 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
H3F3AP84243 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.4□□□□□ -0.26
H3F3AP84243 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.4□□□□□ -0.26
H3F3AP84243 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.4□□□□□ -0.26
H3F3AP84243 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.4□□□□□ -0.26
H3F3AP84243 AC078819.1-201ENST00000547454 765 ntBASIC13.4□□□□□ -0.26
H3F3AP84243 AC012085.1-201ENST00000548270 765 ntBASIC13.4□□□□□ -0.26
H3F3AP84243 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.4□□□□□ -0.26
H3F3AP84243 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.4□□□□□ -0.26
H3F3AP84243 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.4□□□□□ -0.26
H3F3AP84243 ECM1P1-201ENST00000604092 1279 ntBASIC13.4□□□□□ -0.26
H3F3AP84243 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.4□□□□□ -0.26
H3F3AP84243 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.4□□□□□ -0.26
H3F3AP84243 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.4□□□□□ -0.26
H3F3AP84243 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
H3F3AP84243 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms