Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.77□□□□□ -0.05
PKNOX1P55347 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 AL353779.1-201ENST00000434793 351 ntBASIC14.77□□□□□ -0.05
PKNOX1P55347 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.77□□□□□ -0.05
PKNOX1P55347 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.77□□□□□ -0.05
PKNOX1P55347 IGHV3-42-201ENST00000520410 361 ntBASIC14.77□□□□□ -0.05
PKNOX1P55347 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 AC009407.1-201ENST00000568958 598 ntBASIC14.77□□□□□ -0.05
PKNOX1P55347 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.77□□□□□ -0.05
PKNOX1P55347 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.77□□□□□ -0.05
PKNOX1P55347 AP001160.2-201ENST00000596071 487 ntBASIC14.77□□□□□ -0.05
PKNOX1P55347 SRD5A3P1-201ENST00000603021 949 ntBASIC14.77□□□□□ -0.05
PKNOX1P55347 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.77□□□□□ -0.05
PKNOX1P55347 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
PKNOX1P55347 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
PKNOX1P55347 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.77□□□□□ -0.05
PKNOX1P55347 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.05
PKNOX1P55347 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 CLK3P2-201ENST00000427566 1453 ntBASIC14.76□□□□□ -0.05
PKNOX1P55347 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 DRD5P1-201ENST00000456605 1438 ntBASIC14.76□□□□□ -0.05
PKNOX1P55347 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 AC018665.1-201ENST00000622927 1362 ntBASIC14.76□□□□□ -0.05
PKNOX1P55347 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PKNOX1P55347 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.76□□□□□ -0.05
PKNOX1P55347 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.76□□□□□ -0.05
PKNOX1P55347 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.76□□□□□ -0.05
PKNOX1P55347 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 AC036164.1-201ENST00000570544 333 ntBASIC14.76□□□□□ -0.05
PKNOX1P55347 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PKNOX1P55347 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 AL157414.3-201ENST00000624276 1954 ntBASIC14.76□□□□□ -0.05
PKNOX1P55347 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PKNOX1P55347 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PKNOX1P55347 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PKNOX1P55347 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms