Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.21■□□□□ 0.03
HADHAP40939 KRT18P25-201ENST00000508931 1278 ntBASIC15.21■□□□□ 0.03
HADHAP40939 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.21■□□□□ 0.03
HADHAP40939 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.21■□□□□ 0.03
HADHAP40939 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HADHAP40939 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HADHAP40939 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HADHAP40939 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.21■□□□□ 0.03
HADHAP40939 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HADHAP40939 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.21■□□□□ 0.03
HADHAP40939 AC005252.2-201ENST00000624630 1141 ntBASIC15.21■□□□□ 0.03
HADHAP40939 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HADHAP40939 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HADHAP40939 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HADHAP40939 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HADHAP40939 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HADHAP40939 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HADHAP40939 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
HADHAP40939 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HADHAP40939 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.02
HADHAP40939 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.21■□□□□ 0.02
HADHAP40939 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.2■□□□□ 0.02
HADHAP40939 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 AC011495.1-201ENST00000498085 584 ntBASIC15.2■□□□□ 0.02
HADHAP40939 AC022616.1-201ENST00000518688 554 ntBASIC15.2■□□□□ 0.02
HADHAP40939 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.2■□□□□ 0.02
HADHAP40939 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.2■□□□□ 0.02
HADHAP40939 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 AC025048.6-201ENST00000634326 1161 ntBASIC15.2■□□□□ 0.02
HADHAP40939 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.2■□□□□ 0.02
HADHAP40939 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.2■□□□□ 0.02
HADHAP40939 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HADHAP40939 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
HADHAP40939 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HADHAP40939 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HADHAP40939 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.19■□□□□ 0.02
HADHAP40939 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
HADHAP40939 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.19■□□□□ 0.02
HADHAP40939 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.19■□□□□ 0.02
HADHAP40939 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HADHAP40939 RNU1-114P-201ENST00000365297 166 ntBASIC15.19■□□□□ 0.02
HADHAP40939 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.19■□□□□ 0.02
HADHAP40939 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms