Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
COL9A1P20849 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL9A1P20849 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.27■□□□□ 0.04
COL9A1P20849 AL136309.1-201ENST00000403917 691 ntBASIC15.27■□□□□ 0.04
COL9A1P20849 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 AC092580.1-201ENST00000433998 658 ntBASIC15.27■□□□□ 0.04
COL9A1P20849 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC15.27■□□□□ 0.04
COL9A1P20849 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.27■□□□□ 0.04
COL9A1P20849 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC15.27■□□□□ 0.04
COL9A1P20849 AC084781.1-201ENST00000613737 656 ntBASIC15.27■□□□□ 0.04
COL9A1P20849 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL9A1P20849 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.27■□□□□ 0.03
COL9A1P20849 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 CICP11-201ENST00000434745 2827 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL9A1P20849 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 AC003986.3-201ENST00000417460 692 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC15.26■□□□□ 0.03
COL9A1P20849 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 RN7SL81P-201ENST00000493781 261 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 MESTP3-201ENST00000503460 968 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 MIR4683-201ENST00000579659 81 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.26■□□□□ 0.03
COL9A1P20849 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 AL603764.1-201ENST00000636452 321 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 MIEF1-215ENST00000637854 213 ntBASIC15.26■□□□□ 0.03
COL9A1P20849 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
COL9A1P20849 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
COL9A1P20849 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL9A1P20849 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 MAGEA7P-201ENST00000436482 942 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 AC092612.1-201ENST00000514501 998 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 AP000911.2-201ENST00000534330 502 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC15.25■□□□□ 0.03
COL9A1P20849 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms