Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A2P12110 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 AC055876.3-201ENST00000431496 288 ntBASIC14.84□□□□□ -0.03
COL6A2P12110 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 DUX4L27-201ENST00000554796 1261 ntBASIC14.84□□□□□ -0.03
COL6A2P12110 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A2P12110 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 AC138649.4-201ENST00000612222 287 ntBASIC14.84□□□□□ -0.03
COL6A2P12110 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
COL6A2P12110 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A2P12110 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL6A2P12110 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A2P12110 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
COL6A2P12110 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A2P12110 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
COL6A2P12110 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A2P12110 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 AC090505.1-201ENST00000430515 1834 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
COL6A2P12110 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.83□□□□□ -0.04
COL6A2P12110 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 SBF1P1-201ENST00000444527 5631 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A2P12110 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AC134915.1-201ENST00000426461 574 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A2P12110 DOC2GP-202ENST00000514950 1163 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AC023310.3-201ENST00000557027 670 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AC100756.1-201ENST00000562736 682 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.83□□□□□ -0.04
COL6A2P12110 AC120045.2-201ENST00000567334 178 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AC138749.3-201ENST00000567691 622 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 AC116165.1-201ENST00000611806 668 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms