Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AL354702.1-201ENST00000442006 1960 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AC079776.4-201ENST00000511039 504 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AL031432.2-201ENST00000566714 459 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AL928711.1-201ENST00000570165 459 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AP001005.1-201ENST00000571755 1248 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AL645728.2-201ENST00000641974 660 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 REXO1L4P-201ENST00000605109 1937 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 KRT8P37-201ENST00000451609 1420 ntBASIC11.34□□□□□ -0.59
HLA-DQA1P01909 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.59
HLA-DQA1P01909 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
HLA-DQA1P01909 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.59
HLA-DQA1P01909 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AGGF1P1-201ENST00000509500 2073 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AL031284.1-201ENST00000419297 478 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 RPS8P6-201ENST00000426177 609 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AL662844.1-201ENST00000546340 181 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 HNRNPUP1-201ENST00000554987 333 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 CYGB-205ENST00000590175 830 ntTSL 3 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AL121894.2-201ENST00000602977 491 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC097359.3-201ENST00000603982 1210 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 PRKN-208ENST00000610470 531 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 PRKN-209ENST00000612485 225 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms