Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
MSH4O15457 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH4O15457 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.73■□□□□ 0.27
MSH4O15457 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH4O15457 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH4O15457 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH4O15457 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
MSH4O15457 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
MSH4O15457 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.72■□□□□ 0.27
MSH4O15457 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 CICP12-201ENST00000455801 843 ntBASIC16.72■□□□□ 0.27
MSH4O15457 PFN1P12-201ENST00000455938 534 ntBASIC16.72■□□□□ 0.27
MSH4O15457 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH4O15457 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH4O15457 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 AC023824.1-201ENST00000562945 2975 ntBASIC16.72■□□□□ 0.27
MSH4O15457 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.72■□□□□ 0.27
MSH4O15457 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
MSH4O15457 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.71■□□□□ 0.27
MSH4O15457 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MSH4O15457 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.71■□□□□ 0.27
MSH4O15457 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.71■□□□□ 0.27
MSH4O15457 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 AC104306.2-201ENST00000451877 341 ntBASIC16.71■□□□□ 0.27
MSH4O15457 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.71■□□□□ 0.27
MSH4O15457 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.71■□□□□ 0.27
MSH4O15457 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.71■□□□□ 0.27
MSH4O15457 FAM8A2P-201ENST00000528813 1142 ntBASIC16.71■□□□□ 0.27
MSH4O15457 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.71■□□□□ 0.27
MSH4O15457 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH4O15457 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 AL162426.1-201ENST00000624141 743 ntBASIC16.71■□□□□ 0.27
MSH4O15457 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH4O15457 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH4O15457 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MSH4O15457 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.71■□□□□ 0.26
MSH4O15457 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
MSH4O15457 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
MSH4O15457 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.71■□□□□ 0.26
MSH4O15457 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms