Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.84□□□□□ -0.35
SDCBPO00560 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.84□□□□□ -0.35
SDCBPO00560 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.84□□□□□ -0.35
SDCBPO00560 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.84□□□□□ -0.35
SDCBPO00560 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 AC025181.2-201ENST00000606994 802 ntBASIC12.84□□□□□ -0.35
SDCBPO00560 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 AC015802.1-201ENST00000588104 1449 ntBASIC12.84□□□□□ -0.35
SDCBPO00560 AC100757.3-201ENST00000622361 1406 ntBASIC12.84□□□□□ -0.35
SDCBPO00560 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
SDCBPO00560 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
SDCBPO00560 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
SDCBPO00560 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.83□□□□□ -0.36
SDCBPO00560 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.83□□□□□ -0.36
SDCBPO00560 RPL13P2-201ENST00000440687 659 ntBASIC12.83□□□□□ -0.36
SDCBPO00560 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 KRT18P43-201ENST00000469825 1281 ntBASIC12.83□□□□□ -0.36
SDCBPO00560 AC097493.3-201ENST00000509725 367 ntBASIC12.83□□□□□ -0.36
SDCBPO00560 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 TIMM17BP1-201ENST00000545713 516 ntBASIC12.83□□□□□ -0.36
SDCBPO00560 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.83□□□□□ -0.36
SDCBPO00560 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.83□□□□□ -0.36
SDCBPO00560 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.83□□□□□ -0.36
SDCBPO00560 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.83□□□□□ -0.36
SDCBPO00560 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
SDCBPO00560 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
SDCBPO00560 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
SDCBPO00560 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
SDCBPO00560 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
SDCBPO00560 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 AC092580.3-201ENST00000430932 139 ntBASIC12.82□□□□□ -0.36
SDCBPO00560 AC241585.1-201ENST00000433527 519 ntBASIC12.82□□□□□ -0.36
SDCBPO00560 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 AC044860.1-202ENST00000559481 777 ntBASIC12.82□□□□□ -0.36
SDCBPO00560 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms