Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.03■□□□□ 0.16
FOXN3O00409 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.03■□□□□ 0.16
FOXN3O00409 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 AP006294.1-201ENST00000415407 339 ntBASIC16.03■□□□□ 0.16
FOXN3O00409 POM121L8P-201ENST00000417732 1281 ntBASIC16.03■□□□□ 0.16
FOXN3O00409 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 POM121L9P-203ENST00000441984 1285 ntBASIC16.03■□□□□ 0.16
FOXN3O00409 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.03■□□□□ 0.16
FOXN3O00409 AC022447.6-201ENST00000515522 438 ntBASIC16.03■□□□□ 0.16
FOXN3O00409 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 AC025048.6-201ENST00000634326 1161 ntBASIC16.03■□□□□ 0.16
FOXN3O00409 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
FOXN3O00409 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
FOXN3O00409 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
FOXN3O00409 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXN3O00409 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXN3O00409 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
FOXN3O00409 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 HSPA7-201ENST00000445535 1927 ntBASIC16.02■□□□□ 0.16
FOXN3O00409 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
FOXN3O00409 CLUHP2-201ENST00000426660 1303 ntBASIC16.02■□□□□ 0.16
FOXN3O00409 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXN3O00409 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXN3O00409 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
FOXN3O00409 PTP4A1P2-201ENST00000546033 454 ntBASIC16.02■□□□□ 0.16
FOXN3O00409 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.02■□□□□ 0.16
FOXN3O00409 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.02■□□□□ 0.16
FOXN3O00409 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXN3O00409 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.02■□□□□ 0.16
FOXN3O00409 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.02■□□□□ 0.15
FOXN3O00409 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.02■□□□□ 0.15
FOXN3O00409 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.15
FOXN3O00409 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
FOXN3O00409 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.15
FOXN3O00409 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
FOXN3O00409 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXN3O00409 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXN3O00409 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXN3O00409 AC020910.5-201ENST00000623668 1865 ntBASIC16.01■□□□□ 0.15
FOXN3O00409 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
FOXN3O00409 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
FOXN3O00409 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
FOXN3O00409 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXN3O00409 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
FOXN3O00409 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
FOXN3O00409 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXN3O00409 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms