Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM90A2P-201ENST00000511144 1395 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM90A25P-201ENST00000528404 1395 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC078991.1-201ENST00000437297 610 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC135983.4-201ENST00000564116 1262 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC087045.2-201ENST00000606279 1003 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 AC105917.1-201ENST00000506637 2539 ntBASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCDHGA1Q9Y5H4 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC244394.1-201ENST00000435000 1665 ntBASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC006058.4-201ENST00000624016 1670 ntBASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCDHGA1Q9Y5H4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms