Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 AC015802.1-201ENST00000588104 1449 ntBASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 FAM86LP-201ENST00000478302 853 ntBASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SAMD11P1-201ENST00000571429 661 ntBASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 AL928921.2-201ENST00000641325 2442 ntBASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 AC007787.1-201ENST00000588095 1583 ntBASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
RHBDD3Q9Y3P4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 UGT1A2P-201ENST00000454886 866 ntBASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 RN7SL399P-201ENST00000471648 279 ntBASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC027796.2-201ENST00000575326 344 ntBASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms