Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SPDYE17-201ENST00000412399 783 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MIR3687-2-201ENST00000577708 61 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MIR4469-201ENST00000583919 79 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AC004835.2-201ENST00000603762 682 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AL589739.1-201ENST00000607720 493 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MIR3687-1-201ENST00000614492 61 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 ACE3P-201ENST00000423435 1973 ntBASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.03□□□□□ -0.32
CHMP1AQ9HD42 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 AL359881.3-201ENST00000602640 1721 ntBASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.02□□□□□ -0.32
CHMP1AQ9HD42 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AC004461.1-201ENST00000412461 403 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 HIST3H2BA-201ENST00000436555 524 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AC026150.2-201ENST00000564693 1156 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 MIR4453-201ENST00000584019 89 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AC011467.4-201ENST00000594891 528 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 AL513210.1-201ENST00000629608 234 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 CETN4P-206ENST00000642099 2168 ntBASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms