Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.51■□□□□ 0.07
PCDH9Q9HC56 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH9Q9HC56 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AP006294.1-201ENST00000415407 339 ntBASIC15.5■□□□□ 0.07
PCDH9Q9HC56 NUS1P3-201ENST00000423502 862 ntBASIC15.5■□□□□ 0.07
PCDH9Q9HC56 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AL162726.2-201ENST00000438986 1017 ntBASIC15.5■□□□□ 0.07
PCDH9Q9HC56 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AL033527.5-201ENST00000641382 801 ntBASIC15.5■□□□□ 0.07
PCDH9Q9HC56 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDH9Q9HC56 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms