Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 KRT8P35-201ENST00000483942 1338 ntBASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 WASH4P-201ENST00000564273 1246 ntBASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AC009486.1-201ENST00000569860 813 ntBASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AL355385.1-201ENST00000606123 409 ntBASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 AP001267.2-201ENST00000532619 2086 ntBASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 TPT1P11-201ENST00000458482 498 ntBASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 AC022137.2-201ENST00000503482 481 ntBASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 TP53TG3HP-202ENST00000569755 579 ntBASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.25■□□□□ 0.03
LRRC40Q9H9A6 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRRC40Q9H9A6 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms