Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 MIR6816-201ENST00000620368 66 ntBASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 MT2A-202ENST00000561491 581 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 CTBP2P8-201ENST00000422584 1330 ntBASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK3Q9BYB0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 SURF4-203ENST00000371991 715 ntTSL 3 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 MAX-218ENST00000557746 571 ntTSL 4 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 CCT8L1P-201ENST00000465400 1674 ntBASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.72■□□□□ 0.59
SHANK3Q9BYB0 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC006529.1-201ENST00000459978 637 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms