Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28BQ9BUN5 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
CCDC28BQ9BUN5 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AC004461.1-201ENST00000412461 403 ntBASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 AC005562.1-201ENST00000583030 3219 ntBASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TCAM1P-207ENST00000485295 1537 ntBASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC28BQ9BUN5 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RPL37AP1-201ENST00000412502 279 ntBASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 HLA-K-203ENST00000430151 1046 ntBASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms