Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AL023775.1-201ENST00000454907 1746 ntBASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 CYP46A4P-201ENST00000414953 267 ntBASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 HIST2H2BB-201ENST00000449108 381 ntBASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 AC007686.3-201ENST00000619017 3487 ntBASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX2-3Q8TAU0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SALL4P5-201ENST00000419001 1760 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 AC091046.1-201ENST00000331871 207 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 PPY2P-201ENST00000582808 702 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 MIR4750-201ENST00000584564 56 ntBASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX2-3Q8TAU0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms