Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AC025279.2-201ENST00000569730 653 ntBASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AC239800.4-201ENST00000603712 296 ntBASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AL512343.1-201ENST00000605837 169 ntBASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AL162274.1-201ENST00000617191 1098 ntBASIC18.13■□□□□ 0.49
VPS53Q5VIR6 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 AC005912.2-201ENST00000619492 2400 ntBASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS53Q5VIR6 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AL590640.2-201ENST00000457038 527 ntBASIC18.12■□□□□ 0.49
VPS53Q5VIR6 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AL022328.1-201ENST00000610050 478 ntBASIC18.12■□□□□ 0.49
VPS53Q5VIR6 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.12■□□□□ 0.49
VPS53Q5VIR6 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS53Q5VIR6 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 AC018442.1-201ENST00000421439 2061 ntBASIC18.11■□□□□ 0.49
VPS53Q5VIR6 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.11■□□□□ 0.49
VPS53Q5VIR6 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 AC106886.1-201ENST00000568660 600 ntBASIC18.11■□□□□ 0.49
VPS53Q5VIR6 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS53Q5VIR6 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms