Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 AL583810.1-201ENST00000553344 1045 ntBASIC13.91□□□□□ -0.18
RNF4P78317 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.91□□□□□ -0.18
RNF4P78317 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.91□□□□□ -0.18
RNF4P78317 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.91□□□□□ -0.18
RNF4P78317 RN7SL713P-201ENST00000582127 302 ntBASIC13.91□□□□□ -0.18
RNF4P78317 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.91□□□□□ -0.18
RNF4P78317 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.91□□□□□ -0.18
RNF4P78317 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 AC010328.2-201ENST00000597698 1111 ntBASIC13.91□□□□□ -0.18
RNF4P78317 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.91□□□□□ -0.18
RNF4P78317 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RNF4P78317 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RNF4P78317 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 AC099063.4-201ENST00000641099 1602 ntBASIC13.9□□□□□ -0.18
RNF4P78317 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.9□□□□□ -0.18
RNF4P78317 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 AC007969.1-201ENST00000433675 447 ntBASIC13.9□□□□□ -0.18
RNF4P78317 CNN2P10-201ENST00000443067 918 ntBASIC13.9□□□□□ -0.18
RNF4P78317 HOMER2P2-201ENST00000451621 847 ntBASIC13.9□□□□□ -0.18
RNF4P78317 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.9□□□□□ -0.18
RNF4P78317 C2orf69P2-201ENST00000562032 1123 ntBASIC13.9□□□□□ -0.18
RNF4P78317 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.9□□□□□ -0.18
RNF4P78317 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.9□□□□□ -0.18
RNF4P78317 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RNF4P78317 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RNF4P78317 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
RNF4P78317 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
RNF4P78317 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
RNF4P78317 AP000593.2-201ENST00000542775 1433 ntBASIC13.9□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms