Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.7■□□□□ 0.1
HDAC4P56524 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 AC244107.1-201ENST00000442033 332 ntBASIC15.7■□□□□ 0.1
HDAC4P56524 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 SLC25A47P1-201ENST00000531577 414 ntBASIC15.7■□□□□ 0.1
HDAC4P56524 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.7■□□□□ 0.1
HDAC4P56524 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.7■□□□□ 0.1
HDAC4P56524 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HDAC4P56524 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC4P56524 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC4P56524 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC4P56524 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 AC232323.1-201ENST00000540724 2099 ntBASIC15.69■□□□□ 0.1
HDAC4P56524 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HDAC4P56524 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HDAC4P56524 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 AC005229.1-201ENST00000392885 409 ntBASIC15.69■□□□□ 0.1
HDAC4P56524 AC092933.1-201ENST00000393644 945 ntBASIC15.69■□□□□ 0.1
HDAC4P56524 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
HDAC4P56524 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 AC005225.4-201ENST00000557330 545 ntBASIC15.69■□□□□ 0.1
HDAC4P56524 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.69■□□□□ 0.1
HDAC4P56524 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
HDAC4P56524 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 AC140479.7-201ENST00000636301 2332 ntBASIC15.69■□□□□ 0.1
HDAC4P56524 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.69■□□□□ 0.1
HDAC4P56524 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HDAC4P56524 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDAC4P56524 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HDAC4P56524 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms