Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA1P49639 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA1P49639 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXA1P49639 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HOXA1P49639 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 RPL5P21-201ENST00000404620 815 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 AL590627.1-203ENST00000421194 1026 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.56□□□□□ -0.4
HOXA1P49639 TIMM8BP1-201ENST00000452384 211 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC12.56□□□□□ -0.4
HOXA1P49639 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC12.56□□□□□ -0.4
HOXA1P49639 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.56□□□□□ -0.4
HOXA1P49639 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.56□□□□□ -0.4
HOXA1P49639 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 AC026120.1-201ENST00000611536 926 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA1P49639 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA1P49639 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA1P49639 WASH3P-207ENST00000560956 1394 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 FO538757.1-201ENST00000623083 1397 ntBASIC12.56□□□□□ -0.4
HOXA1P49639 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 AC018442.1-201ENST00000421439 2061 ntBASIC12.55□□□□□ -0.4
HOXA1P49639 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 LPO-204ENST00000543544 2350 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 PTMS-202ENST00000389462 773 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 SPCS2P4-201ENST00000436160 681 ntBASIC12.55□□□□□ -0.4
HOXA1P49639 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.55□□□□□ -0.4
HOXA1P49639 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 KRT8P23-201ENST00000560090 1207 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms