Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.58■□□□□ 0.4
BRCA1P38398 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17.58■□□□□ 0.4
BRCA1P38398 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
BRCA1P38398 AC004466.2-201ENST00000614749 516 ntBASIC17.58■□□□□ 0.4
BRCA1P38398 AC091769.1-201ENST00000619576 568 ntBASIC17.58■□□□□ 0.4
BRCA1P38398 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
BRCA1P38398 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.58■□□□□ 0.4
BRCA1P38398 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
BRCA1P38398 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
BRCA1P38398 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BRCA1P38398 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.57■□□□□ 0.4
BRCA1P38398 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.57■□□□□ 0.4
BRCA1P38398 AC006116.2-201ENST00000589958 988 ntBASIC17.57■□□□□ 0.4
BRCA1P38398 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.57■□□□□ 0.4
BRCA1P38398 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 LAP3P2-201ENST00000454686 1454 ntBASIC17.57■□□□□ 0.4
BRCA1P38398 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BRCA1P38398 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BRCA1P38398 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
BRCA1P38398 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BRCA1P38398 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.57■□□□□ 0.4
BRCA1P38398 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 PGAM1P11-201ENST00000416729 680 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 ZNF877P-201ENST00000437614 612 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.56■□□□□ 0.4
BRCA1P38398 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.56■□□□□ 0.4
BRCA1P38398 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.56■□□□□ 0.4
BRCA1P38398 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.56■□□□□ 0.4
BRCA1P38398 AC092903.1-201ENST00000466506 262 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 AC145285.5-201ENST00000562217 361 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 AC120498.7-201ENST00000562876 330 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 MIR4746-201ENST00000579802 71 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC17.56■□□□□ 0.4
BRCA1P38398 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.56■□□□□ 0.4
BRCA1P38398 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 PCDHA14-201ENST00000506751 2298 ntBASIC17.56■□□□□ 0.4
BRCA1P38398 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BRCA1P38398 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.56■□□□□ 0.4
BRCA1P38398 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.55■□□□□ 0.4
BRCA1P38398 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms