Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.23■□□□□ 0.03
RPA3P35244 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RPA3P35244 PTENP1-202ENST00000532280 3996 ntBASIC15.23■□□□□ 0.03
RPA3P35244 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPA3P35244 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPA3P35244 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
RPA3P35244 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 AL354702.1-201ENST00000442006 1960 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 AC015922.1-201ENST00000421102 1152 ntBASIC15.22■□□□□ 0.03
RPA3P35244 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 BCRP1-201ENST00000444246 691 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.22■□□□□ 0.03
RPA3P35244 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.22■□□□□ 0.03
RPA3P35244 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.22■□□□□ 0.03
RPA3P35244 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
RPA3P35244 SPCS2P1-201ENST00000561636 679 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AL096865.1-201ENST00000606796 927 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AC004840.1-201ENST00000636359 365 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AF228730.6-201ENST00000641497 218 ntBASIC15.22■□□□□ 0.03
RPA3P35244 AC084121.3-201ENST00000641716 218 ntBASIC15.22■□□□□ 0.03
RPA3P35244 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
RPA3P35244 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.22■□□□□ 0.03
RPA3P35244 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPA3P35244 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.21■□□□□ 0.03
RPA3P35244 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.21■□□□□ 0.03
RPA3P35244 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RPA3P35244 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
RPA3P35244 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
RPA3P35244 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.21■□□□□ 0.03
RPA3P35244 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.21■□□□□ 0.03
RPA3P35244 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RPA3P35244 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
RPA3P35244 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.21■□□□□ 0.03
RPA3P35244 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPA3P35244 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms